Advanced Tractography Coding Assignment¶
by Anna Schroder
Estimated Time
Around 2 hours to code
Well done! You now have all the tools to perform structural connectome analysis on your own datasets! For those who want a bit of a challenge out of today, there is an additional coding assignment that you can perform yourself. We have the luck of scanning a phantom, this means we have a ground truth of which regions are connected (You can find it as GroundTruth.csv).
Your coding assignment is to:
Create connectomes of MRtrix3 and your custom made deterministic tractography.
Import them into Python
Find a way to compare them agains the ground truth!
This is a great method to see how basic and advanced methods compare despite them using the same principles!
